Vegetation and biochemical indices retrieved from a multitemporal
AVIRIS data set
G. Schmuck, J. Verdebout, S. L. Ustin*, A. J. Sieber and S.
Jacquemoud
Commission of the European Communities
Joint Research Centre - Institute for Remote Sensing Applications
21020 Ispra (Va) - Italy
* University of California Davis
Department of Land, Air, and Water Resources
Davis CA 95616 - USA
Abstract
An analysis, based on the inversion of a simple non-linear model of the
ground reflectance, was conducted on several AVIRIS scenes. The scenes
were acquired during the MAC Europe 91 campaign on the 5th and 22nd of
July, over two test sites (Black Forest and Freiburg). The model consists
in a linear mixing of the soil reflectance and a green vegetation reflectance
described with a Kubelka-Munk formula containing the chlorophyll a+b and
water specific absorption coefficients. Its inversion provides a Green
Vegetation Fraction (GVF) of the pixel and two parameters related respectively
to chlorophyll (achl) and water (aw).
The model can then be used to evaluate the magnitude of the 1.7 mm
absorption feature which is thought to be a signature of the vegetation
biochemical components. The spatial and temporal variability of this feature
over the scenes is commented.
1. Introduction
Estimating the leaf biochemical components (photosynthetic pigments, water,
lignin, cellulose...) from high spectral resolution data is a challenge
for the coming years. Many studies (Goetz et at., 1990; Jacquemoud and
Baret, 1990; Curran et al., 1992...) showed the prospect of succeeding
in this task at the leaf level. Nevertheless, a vegetation canopy is not
a large leaf and results obtained at the leaf level may not be suitable
at the canopy level. There are mainly two strategies to estimate the canopy
biochemistry the use of statistical relationships and the use of models.
The first method allowed Peterson et al. (1988) and Wessman et al. (1989)
to map lignin and nitrogen on temperate forests with AIS data. The second
one is relatively new and promising: it consists in modeling the canopy
spectral reflectance and in inverting the model in order to retrieve the
vegetation characteristics. In this way, a spectral matching technique
has been applied by Gao and Goetz (1990, 1992) with a very simple model
to the 1.5-1.74 mm region of AVIRIS spectra.
These authors demonstrated that the vegetation spectrum in this wavelength
region consists of the spectral component of liquid water and spectral
components of dry vegetation material. Recently, Jacquemoud and Baret (1993)
attempted to invert a leaf+canopy radiative transfer model on vegetation
spectra in order to estimate the chlorophyll a+b concentration as well
as the equivalent water thickness. An operational use of this approach
requires a compromise between simple equations that cannot take into account
the multiple scattering due to canopy architecture (distortion of the biochemical
signal), and complex models whose inversion is tricky and time consuming.
The main purpose of this paper is to test the possibility of inverting
a non-linear model of ground reflectance on AVIRIS scenes containing both
forested areas and several types of agricultural fields. In this simple
model, we first separate the soil fraction from the green vegetation fraction
which is described by a Kubelka-Munk formula for an optically thick medium.
Chlorophyll and water are taken into account by using their respective
specific absorption coefficients gleaned in the literature. The temporal
variability of the suspected biochemical signature is also examined as
scenes were acquired on the same test sites at about two weeks interval.
2. Test Site Description
In the frame of the MAC Europe'91 campaign, AVIRIS overflights have been
performed on the 5th and 22nd of July over two test sites in the southern
part of Germany. An extensive ground truth measurement campaign was set
up to accommodate the airborne measurements. Unfortunately, not all of
the collected ground reflectance data have been available for our studies.
The agricultural study area is situated approximately 20 km West of
the City of Freiburg in the Upper Rhine Valley and has an extension of
6 x 4 km This test site contains both forested areas (19%) and agricultural
areas (50%). The agricultural part is intensively cultivated with the main
crops being wheat, corn, barley, potatoes, sugar beet, and vine. The average
field size of approximately 1.5 ha is representative for small scale European
farming. The area is topographically flat at an altitude of 200 m above
sea level. The soils are dominated by the quarternary sediments of the
Rhine River and thus show a great variety of grain size distribution and
high porosity. The latter accompanied by low clay contents results in high
infiltration rates requiring the irrigation of the intensive cultivation
areas of corn.
The Black Forest test site is located near the town of Villingen/Schwennigen
at an altitude ranging from 800 to 960 m above sea level. Beside some small
areas covered by Scots pine (Pinus silvestris L.) and silver
fir (Abies alba Mill.), the dominant tree specie of the overall
region is Norway spruce (Picea abies) with tree ages from 80 to
120 years and tree heights from 30 to 40 m. The understory is mainly composed
of blueberries and of young spruce and fir trees for rejuvenation. Soils
are dominated by sandy-loamy acid brown earths.
3. Modeling Leaf Spectra
Although canopy reflectance characteristics cannot be fully explained by
leaf reflectance properties, the main connection between the changes in
the biochemical content of a canopy and the radiative transfer from a canopy
is through changes in the spectral properties of the leaf (Peterson, 1991).
The overall shape of a leaf reflectance spectrum can be explained by the
absorption features of chlorophyll and water, once they are included in
a radiative transfer model. A number of simple models exist which describe
the scattering in various ways: Kubelka-Munk (Allen and Richardson, 1968),
plate models (Jacquemoud and Baret, 1990), stochastic model (Tucker and
Garratt, 1977), among others. They are successful in reproducing the major
shapes of a leaf reflectance (or transmittance) spectrum such as the photosynthetic
pigments absorption peaks from the visible region up to the red edge transition,
and the water absorption peaks in the middle infrared. However, there are
details in the spectrum which are still unaccounted for, such as a small
absorption feature centered around 1.7 mm. An
increasing interest is being brought to this feature as it is thought to
be a signature of biochemicals such as lignin, cellulose, starch and proteins.
In the frame of spectral unmixing studies, Smith et al. (1990) have revealed
a systematically recurring residual; it has also been directly investigated
using spectral matching techniques (Goetz et al., 1990).
We are presently working on radiative transfer models which explicitly
include the leaf biochemical components. These biochemicals are introduced
by considering each of their contribution in the spectral absorption coefficient
of the leaf tissue. It is not the purpose of this paper to present this
work which has not yet reached its conclusions. However, the studies conducted
so far on laboratory spectra have shown:
-
that the 1.7 mm feature cannot tee explained
by water alone,
-
that it-cannot be reproduced by using the specific absorption coefficient
spectra available today for lignin (wood), cellulose, starch or proteins,
-
that the model based on chlorophyll and water can reproduce accurately
the spectrum in some spectral regions where these two components dominate
the absorption (from 0.5 to 0.73 mm and from
1.5 to 1.65 mm respectively),
-
that the amplitude of the 1.7 m m is dependent
on the type of vegetation: thus in Figure l,
one can notice that the residual is higher for the spruce needles than
for the other plant leaves.
Ultimately, our purpose is to couple a leaf optical properties model with
a canopy reflectance model, and to perform the inversion on imaging spectrometry
spectra. This is a long-term job. In order to document the feasibility
and the interest of such a procedure, we will consider a simplified model
based on the Schuster-Schwarzschild ("two flow") approximation of the radiative
transfer equation (Chandrasekhar, 1960). In that case, the complexity of
the optimization algorithm is drastically reduced, and the inversion procedure
is conceivable on an AVIRIS cube.
4. Processing of AVIRIS Data
The first task is to correct the image from the atmospheric effects. The
surface reflectance is obtained from the radiance by using the "Atmosphere
Removal Programs" developed at the CSES/CIRES/University of Colorado (Gao
and Goetz, 1990). This program uses the 5S code to model- the aerosols
while the gaseous transmittance calculation allows for one pixel to another
variable amount of atmospheric water vapor. The amount of water vapor is
obtained from the intensity of the absorption lines at 0.94 and 1.14 mm
Figure 2 shows off typical reflectance spectra
derived from this procedure. It can be seen that the near infrared plateau
is still much disturbed by remains of the water vapor features; such an
effect would be typically produced by a slight error in the wavelength
calibration. This is of little importance for this study as it does not
make use of the NIR plateau region.
As the AVIRIS scenes contained both forested areas with a high vegetation
cover and agricultural fields of which some have a low cover, the analysis
had to take into account the soil reflectance. This was done in the simplest
way by assembling a linear mixing of soil and vegetation spectra; we therefore
write:
Rp(l ) = as×
Rs(l ) + av×
Rv(l )
|
(l)
|
where Rp(l ) is the reflectance
of the pixel, Rs(l ) is the
soil reflectance, Rv(l ) is
the vegetation reflectance, as and av
are the corresponding abundances in the pixel spectrum. The soil spectrum
was taken from the image as the mean spectrum of a small area known to
be bare soil, and assumed to be representative of the scene. The vegetation
spectrum was modeled with a Kubelka-Munk formula adapted for an optically
thick homogeneous medium:
where w 0(l
) is the single scattering albedo of the medium, k(l
) its absorption coefficient, and s its scattering coefficient.
As the diffusion phenomena inside leaf tissues are mainly due to multiple
reflections and refractions, s can reasonably be assumed to be wavelength
independent. Allen and Richardson (1968) also described the interaction
of light with a plant canopy with the Kubelka-Munk theory, one must however
highlight that the scattering coefficient defined by these authors (let
note s') is in fact a backscattering coefficient which differs from
the scattering coefficient by a factor two: s = 2 x s'. Equation
2 depends on the definition adopted. Regarding the absorption in vegetation,
we assume that it is mainly due to chlorophyll and water and write:
where kchl(l ) is the specific
absorption coefficient of chlorophyll a+b expressed in cm2×
m g-1, kw(l
) is the specific absorption coefficient of water expressed in cm-1
(we used for chlorophylls the in vivo absorption coefficient of Jacquemoud
and Baret (1990) and the measurements of Curcio and Petty (1951) for water),
cchl is the chlorophyll concentration expressed in mg×
cm-2, and cw is the equivalent water thickness
expressed in cm. Finally, achl and aw
defined as the above concentrations divided by the scattering coefficient
are the independent parameters of the vegetation spectrum model.
By combining formula (1), (2), (3) and (4), one obtains a model of the
pixel reflectance as a non-linear function of four parameters, as,
av, achl, and aw: these parameters
have been determined by least mean square fitting on the AVIRIS pixel reflectance
by using a Marquardt algorithm (Marquardt, 1963). Two spectral windows
were used in the fitting: the region ranging from 0.5 to 0.73 mm
and that from 1.5 to 1.65 mm where the chlorophyll
and water absorptions are respectively dominant. Once the fitting is performed,
we can compute a "Green Vegetation Fraction" of the pixel, defined by:
We also retrieve a measured spectrum of the green vegetation fraction Rvm(l
):
Assuming that the 1.7 mm feature is an absorption
due to a component of vegetation, we logically evaluate its magnitude from
the absorptance corresponding to the measured (Avm) and
fitted vegetation spectra (Av). The absorptance has been
defined in this study as k/s and obtained by combining equations
(2) and (3):
The residual has then been evaluated in the 1.65 to 1.76 mm
spectral interval as:
where the average is taken on the N AVIRIS channels in this spectral window.
In addition, several vegetation indices such as the NDVI (Normalized),
the MSI Moisture Stress Index), ...etc have been computed. This analysis
procedure was applied to four AVIRIS scenes (the Black Forest the Freiburg
test sites on two dates). The processing of one scene took about 8 hours
of computing tame on a SUN SPARC 10 workstation.
5. Results
Figure 3 shows that the above model can
reproduce very well the spectra of the vegetated areas: the mean relative
deviation (D R/R) between the measured
and modeled pixel reflectance spectra is typically of the order of 0.05
within the fitting windows.
The results of the analysis performed on a part of the Freiburg test
site, which contains both forested surfaces (2 large areas at the top/right
part and a smaller one in the right corner of the image) and agricultural
units, are gathered in Figures 4 and 5.
The rectangular area in the top left corner of the image is a small lake;
a small town is located in the centre of the image. The images in the left
column of the figures represent processed AVIRIS data from the overflight
of the 5th of July, the right column of the 22nd of July. By comparing
the images from the two overflights a number of qualitative comments can
already be made, but a detailed interpretation will only be possible by
the confrontation with ground data, which are at the moment not available.
Over the forested regions, all the calculated indices and parameters
are very stable from one overflight to the other, this was to be expected
as a forest does not change significantly within a two week period. On
the contrary, all the parameters calculated on the agricultural units reflect
the growing and harvesting cycle of vegetation. Compared with the vegetation
indices NDVI and MSI, the chlorophyll and water parameter (achl
and aw) demonstrate a higher sensitivity to the growing
process. However, the interpretation of these two parameters is difficult
as the hypothesis of the model to have an optically thick canopy probably
does not hold on the fields. The image of the Green Vegetation Fraction
seems to contain essentially the same information as the NDVI image although
showing a better dynamics with respect to the cover type.
Major emphasis has been placed on the residual image in the spectral
region of 1.7 mm because different biochemical
components like lignin and cellulose have absorption features near this
wavelength region. While prediction of the vegetation spectral reflectance
by the model does not vary significantly in accuracy with wavelength in
the other spectral domains, the residual seems to be higher around 1.7
mm specially in the case of the forest spectrum
(Figure 3). This is strengthened by Figure
5 where it is obvious that this residual clearly discriminates between
forest and other types of vegetation. Within the forest, the spatial variability
of the residual is clearly correlated with that of the Moisture Stress
Index MSI (negative correlation) and the water parameter aw
(positive correlation). The situation is more complex regarding the agricultural
units within the test site. By comparing the two residual images, several
fields appear brighter (higher residual) on the 22nd of July, which could
; be related to the maturation of the different crops. A definite interpretation
(taking into account the very low values of the residual) will only be
possible by comparing these images with the agricultural and meteorological
data of the local authorities.
A comparison of the AVIRIS images of the Black Forest test site revealed
no significant differences between the two overflights regarding the calculated
vegetation indices and parameters. Of major interest are three well documented
plots within this forest, of which two have been fertilized with ammonium
sulfate of different concentrations for the last three years. According
to our analysis eventual effects of the fertilization on canopy characteristics
like chlorophyll concentration, water content and the biochemical components
in the 1.7 mm region were not detectable.
6. Conclusion
At this point of the study, we can conclude that the 1.7 mm
residual does show a systematic- relation with the vegetation cover type.
It is markedly higher on forests than on agricultural crops and significantly
varies within the forest. In this respect, the results obtained on two
different test sites and two dates are reproducible. On the fields, the
variability is very faint and partly obscured by the uncertainties resulting
from the detector noise. Progress in the interpretation of this spectral
feature needs further work both by confronting the remotely sensed data
with ground information and by performing accurate and systematic measurements
in the laboratory.
This work has also shown the possibility of inverting non-linear models
of the green vegetation spectrum on imaging spectrometer data. Although
the model used is excessively simple, it contains explicitly the effect
of the two main components which are chlorophyll and water, and is able
to describe accurately the spectrum shape in two spectral windows. This
result is encouraging to pursue this approach by using more detailed models
which will make use of the entire spectrum and will provide parameters
more easily interpretable in terms of the canopy characteristics.
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1998, Center for Spatial
Technologies and Remote Sensing (CSTARS)
University of California, Davis